This repository hosts the source code corresponding to the method described in our 2016 paper published in Genome Biology, Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression
To install it, the easiest is to use the R
package devtools
and its function install_github
. To do so, open an R
session and enter
install.packages(c("devtools","curl")) ##Installs devtools and the MCPcounter dependancy 'curl'
library(devtools)
install_github("ebecht/MCPcounter",ref="master", subdir="Source")
Examples on how to run the algorithm on your data are shown in the documentation ?MCPcounter.estimate
{ "mcpServers": { "mcpcounter": { "command": "install_github", "args": [ "ebecht/MCPcounter", "ref=master", "subdir=Source" ] } } }
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